Minimum Information about a Biosynthetic Gene cluster.

Marnix H Medema; Renzo Kottmann; Yi Yilmaz; Matthew Cummings; John B Biggins; Kai Blin; Irene de Bruijn; Yi Chooi; Jan Claesen; R Cameron Coates; Pablo Cruz-Morales; Srikanth Duddela; Stephanie Düsterhus; Daniel Edwards; David P Fewer; Neha Garg; Christoph Geiger; Juan Pablo Ju; Jianhua Ju; Anja Greule; Michalis Hadjithomas; Anthony S Haines; Eric J N Helfrich; Matthew L Hillwig; Keishi Ishida; Jon Jones; Katrin Ju; Carsten Kegler; Hyun Uk Kim; Peter Kötter; Daniel Krug; Joleen Masschelein; Alexey V Melnik; Simone M Mantovani; Emily A Monroe; Marcus Moore; Nathan Moss; Hans-Wilhelm Nützmann; Guohui Pan; Amrita Pati; Daniel Petras; F Jerry Reen; Federico Rosconi; Zhe Rui; Zhenhua Tian; Nicholas J Tobias; Yuta Yu; Philipp Wiemann; Elizabeth Wyckoff; Xiaohui Yan; Yi Yim; Fengan Yu; Yunchang Xie; Bertrand Aigle; Alexander K Apel; Carl J Balibar; Emily P Balskus; Francisco Barona-Gómez; Andreas Bechthold; Helge B Bode; Rainer Borriss; Sean Brady; Axel A Brakhage; Patrick Caffrey; Yi Cheng; Jon Clardy; Russell J Cox; René de Mot; Stefano Donadio; Mohamed S Donia; Wilfred A van Der Donk; Pieter C Dorrestein; Sean Doyle; Arnold J M Driessen; Monika Ehling-Schulz; Karl-Dieter Entian; Michael A Fischbach; Lena Gerwick; William H Gerwick; Harald Gross; Bertolt Gust; Christian Hertweck; Monica Höfte; Jens Jensen; Leonard Katz; Leonard Kaysser; Jonathan L Klassen; Nancy P Keller; Jan Kormanec; Oscar P Kuipers; Tomohisa Kuzuyama; Nikos C Kyrpides; Hyung-Jin Kwon; Sylvie Lautru; Rob Lavigne; Chia y Lee; Bai Linquan; Xinyu Liu; Wen Liu; Andriy Luzhetskyy; Taifo Mahmud; Yi Mast; Yvonne Mast; Carmen Méndez; Mikko Metsä-Ketelä; Jason Micklefield; Douglas A Mitchell; Bradley S Moore; Leonilde M Moreira; Rolf Müller; Brett A Neilan; Markus Nett; Jens Nielsen; Fergal O'Gara; Hideaki Oikawa; Anne Osbourn; Marcia S Osburne; Bohdan Ostash; Shelley M Payne; Jean-Luc Pernodet; Miroslav Petricek; Jörn Piel; Olivier Ploux; Jos M Raaijmakers; José A Salas; Esther K Schmitt; Barry Scott; Ryan F Seipke; Ben Shen; David H Sherman; Kaarina Sivonen; Michael J Smanski; Margherita Sosio; Evi Stegmann; Roderich D Süssmuth; Kapil Tahlan; Christopher M Thomas; Yi Tang; Andrew W Truman; Muriel M. Viaud; Jonathan D Walton; Christopher T Walsh; Tilmann Weber; Gilles P van Wezel; Barrie Wilkinson; Joanne M Willey; Wolfgang Wohlleben; Gerard D Wright; Nadine Ziemert; Changsheng Zhang; Sergey B Zotchev; Rainer Breitling; Eriko Takano; Frank Oliver Glöckner; Jon Moore; Guohui Ju; Xiaohui Ju

doi:10.1038/nchembio.1890

Journal Articles Nature Chemical Biology Year : 2015

Minimum Information about a Biosynthetic Gene cluster.

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Marnix H Medema

Function : Author

Renzo Kottmann

Function : Author

Jacobs University [Bremen]

Microbial genomics and bioinformatics research group

Yi Yilmaz

Function : Author

Max Planck Institute for Marine Microbiology

Matthew Cummings

Function : Author

John B Biggins

Function : Author

Kai Blin

Function : Author

Irene de Bruijn

Function : Author

Yi Chooi

Function : Author

Jan Claesen

Function : Author

R Cameron Coates

Function : Author

Pablo Cruz-Morales

Function : Author

Srikanth Duddela

Function : Author

Stephanie Düsterhus

Function : Author

Daniel Edwards

Function : Author

Atmospheric Chemistry Observations and Modeling Laboratory

David P Fewer

Function : Author

Department of Food and Environmental Sciences

Neha Garg

Function : Author

Collaborative Mass Spectrometry Innovation Center

Christoph Geiger

Function : Author

Juan Pablo Ju

Function : Author

Heilongjiang Institute of Science and Technology

Jianhua Ju

Function : Author

Heilongjiang Institute of Science and Technology

Anja Greule

Function : Author

Michalis Hadjithomas

Function : Author

Anthony S Haines

Function : Author

Eric J N Helfrich

Function : Author

Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]

Matthew L Hillwig

Function : Author

Keishi Ishida

Function : Author

Jon Jones

Function : Author

Katrin Ju

Function : Author

Carsten Kegler

Function : Author

Merck Stiftungsprofessur fûr Molekulare Biotechnologie Fachbereich Biowissenscharten

Hyun Uk Kim

Function : Author

Department of Opto-Mechatronics Engineering and Cogno-Mechatronics Engineering

Peter Kötter

Function : Author

Daniel Krug

Function : Author

Joleen Masschelein

Function : Author

Alexey V Melnik

Function : Author

Simone M Mantovani

Function : Author

Emily A Monroe

Function : Author

Marcus Moore

Function : Author

University of Liverpool

Nathan Moss

Function : Author

Hans-Wilhelm Nützmann

Function : Author
PersonId : 780296
ORCID : 0000-0002-6855-7556

Guohui Pan

Function : Author

College of Computer Science and Technology [Zhejiang] (Zhejiang University)

Amrita Pati

Function : Author

Daniel Petras

Function : Author

F Jerry Reen

Function : Author

Federico Rosconi

Function : Author

Zhe Rui

Function : Author

Zhenhua Tian

Function : Author

University of Florida [Gainesville]

Nicholas J Tobias

Function : Author

Yuta Yu

Function : Author

School of Management

Philipp Wiemann

Function : Author

Elizabeth Wyckoff

Function : Author

Xiaohui Yan

Function : Author

State Key Laboratory of Nuclear Physics and Technology

Yi Yim

Function : Author

Massachusetts Institute of Technology

Fengan Yu

Function : Author

Memorial Sloane Kettering Cancer Center [New York]

Yunchang Xie

Function : Author

South China Sea Institute of Oceanology

Bertrand Aigle

Function : Author
PersonId : 13778
IdHAL : bertrand-aigle
ORCID : 0000-0001-5266-5926
IdRef : 120677407

Dynamique des Génomes et Adaptation Microbienne

Alexander K Apel

Function : Author

Carl J Balibar

Function : Author

Emily P Balskus

Function : Author

Francisco Barona-Gómez

Function : Author

Andreas Bechthold

Function : Author

Helge B Bode

Function : Author

Merck Stiftungsprofessur fûr Molekulare Biotechnologie Fachbereich Biowissenscharten

Rainer Borriss

Function : Author

Institut für Biologie [Berlin]

Sean Brady

Function : Author

Axel A Brakhage

Function : Author

Patrick Caffrey

Function : Author

School of Biomolecular and Biomedical Science and Centre for Synthesis and Chemical Biology

Yi Cheng

Function : Author

Jon Clardy

Function : Author

Russell J Cox

Function : Author

René de Mot

Function : Author
PersonId : 780297
ORCID : 0000-0002-0030-9441

Stefano Donadio

Function : Author

Parallélisme, Réseaux, Systèmes, Modélisation

Mohamed S Donia

Function : Author

Wilfred A van Der Donk

Function : Author

Pieter C Dorrestein

Function : Author

Skaggs School of Pharmacy and Pharmaceutical Sciences [San Diego]

Sean Doyle

Function : Author

[GIN] Grenoble Institut des Neurosciences

Pixyl Medical [Grenoble]

Arnold J M Driessen

Function : Author

Integrated Optical MicroSystems

Monika Ehling-Schulz

Function : Author

7Lehrstuhl für Mikrobielle Ökologie, Department für Grundlagen der Biowissenschaften,

Karl-Dieter Entian

Function : Author

Michael A Fischbach

Function : Author

Service Néphrologie Pédiatrique

Lena Gerwick

Function : Author

William H Gerwick

Function : Author

Skaggs School of Pharmacy and Pharmaceutical Sciences [San Diego]

Harald Gross

Function : Author
PersonId : 780298
ORCID : 0000-0002-0731-821X

Advanced Resources and Risk Technology

Bertolt Gust

Function : Author

Christian Hertweck

Function : Author

Monica Höfte

Function : Author
PersonId : 779660
ORCID : 0000-0002-0850-3249
IdRef : 193374951

Laboratory of Phytopathology (K.C., H.S., B.A., M.H.)

Jens Jensen

Function : Author

Trifork Aarhus C

Aalborg University [Denmark]

Leonard Katz

Function : Author

Centers for Disease Control and Prevention [Atlanta]

Leonard Kaysser

Function : Author

Jonathan L Klassen

Function : Author

Nancy P Keller

Function : Author

Groupe d'Etude de la Matière Condensée

Jan Kormanec

Function : Author

Oscar P Kuipers

Function : Author

Groningen Biomolecular Sciences and Biotechnology Institute

Tomohisa Kuzuyama

Function : Author

Nikos C Kyrpides

Function : Author

DOE Joint Genome Institute [Walnut Creek]

Hyung-Jin Kwon

Function : Author

Pusan National University

Sylvie Lautru

Function : Author
PersonId : 5948
IdHAL : sylvielautru
ORCID : 0000-0002-7935-704X
IdRef : 076437469

Microbiologie Moléculaire des Actinomycètes

Institut de génétique et microbiologie [Orsay]

Rob Lavigne

Function : Author
PersonId : 768987
ORCID : 0000-0001-7377-1314
IdRef : 224163981

Laboratory of Gene Technology

Chia y Lee

Function : Author

Bai Linquan

Function : Author

Xinyu Liu

Function : Author

Joint Center for Structural Genomics

Wen Liu

Function : Author

Centre européen de recherche et d'enseignement des géosciences de l'environnement

Andriy Luzhetskyy

Function : Author

Taifo Mahmud

Function : Author

Yi Mast

Function : Author

Yvonne Mast

Function : Author

Carmen Méndez

Function : Author

Centre de Recherches et d'Applications Pédagogiques en Langues

Mikko Metsä-Ketelä

Function : Author

Jason Micklefield

Function : Author

Douglas A Mitchell

Function : Author

Space Sciences Laboratory [Berkeley]

Bradley S Moore

Function : Author

Leonilde M Moreira

Function : Author

Polytechnic Institute of Leiria

Rolf Müller

Function : Author
PersonId : 779392
ORCID : 0000-0002-1042-5665

NMR Laboratory, Université de Mons

Brett A Neilan

Function : Author

Markus Nett

Function : Author

Jens Nielsen

Function : Author
PersonId : 758788
ORCID : 0000-0002-9955-6003

Fergal O'Gara

Function : Author

School of Biomedical Science

BIOMERIT Research Centre, School of Microbiology

Hideaki Oikawa

Function : Author

Anne Osbourn

Function : Author

Marcia S Osburne

Function : Author

Bohdan Ostash

Function : Author

Shelley M Payne

Function : Author

Department of Engineering Science

Jean-Luc Pernodet

Function : Author
PersonId : 759103
ORCID : 0000-0002-6129-7093
IdRef : 078116635

Institut de Biologie Intégrative de la Cellule

Microbiologie Moléculaire des Actinomycètes

Miroslav Petricek

Function : Author

Jörn Piel

Function : Author

Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]

Olivier Ploux

Function : Author

Laboratoire Charles Friedel

Jos M Raaijmakers

Function : Author

Laboratory of Phytopathology

Department of Microbial Ecology

José A Salas

Function : Author

Department of Animal Production

Esther K Schmitt

Function : Author

IMV Technologies

Barry Scott

Function : Author

Ryan F Seipke

Function : Author

Ben Shen

Function : Author

Gulliver (UMR 7083)

David H Sherman

Function : Author

Kaarina Sivonen

Function : Author

Department of Food and Environmental Sciences

Michael J Smanski

Function : Author

Margherita Sosio

Function : Author

Evi Stegmann

Function : Author

Roderich D Süssmuth

Function : Author

Institut für Chemie

Kapil Tahlan

Function : Author

Christopher M Thomas

Function : Author

Lipides - Nutrition - Cancer (U866)

Yi Tang

Function : Author

Andrew W Truman

Function : Author

Muriel M. Viaud

Function : Author
PersonId : 743813
IdHAL : muriel-viaud
ORCID : 0000-0001-8341-0555
IdRef : 188613897

Centre de Recherche Paul Pascal

Jonathan D Walton

Function : Author

DEPARTMENT OF CHEMISTRY

Christopher T Walsh

Function : Author

Tilmann Weber

Function : Author
PersonId : 779661
ORCID : 0000-0002-8260-5120

Gilles P van Wezel

Function : Author

Barrie Wilkinson

Function : Author

Joanne M Willey

Function : Author

Wolfgang Wohlleben

Function : Author

Gerard D Wright

Function : Author

Nadine Ziemert

Function : Author

Molekulare Ökologie

Changsheng Zhang

Function : Author

Joint Attosecond Science Laboratory

Sergey B Zotchev

Function : Author

Rainer Breitling

Function : Author

Eriko Takano

Function : Author
PersonId : 780299
ORCID : 0000-0002-6791-3256

Frank Oliver Glöckner

Function : Author

Max Planck Institute for Marine Microbiology

Jon Moore

Function : Author

Department of Mechanical and Aerospace Engineering [Univ California Davis]

Guohui Ju

Function : Author

Xiaohui Ju

Function : Author

Abstract

A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.

Keywords

secondary metabolism gene cluster database

Domains

Life Sciences [q-bio]

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nchembio.1890.pdf (937.37 Ko)

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https://hal.science/hal-01430728

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Last modification on : Thursday, September 7, 2023-4:08:10 PM

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hal-01430728 , version 1 (01-10-2021)

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HAL Id : hal-01430728 , version 1
DOI : 10.1038/nchembio.1890
PRODINRA : 329878
PUBMED : 26284661
WOS : 000359954700003

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Marnix H Medema, Renzo Kottmann, Yi Yilmaz, Matthew Cummings, John B Biggins, et al.. Minimum Information about a Biosynthetic Gene cluster.. Nature Chemical Biology, 2015, 11 (9), pp.625-31. ⟨10.1038/nchembio.1890⟩. ⟨hal-01430728⟩

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Minimum Information about a Biosynthetic Gene cluster.

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