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Journal Articles Nature Chemical Biology Year : 2015

Minimum Information about a Biosynthetic Gene cluster.

Marnix H Medema , Renzo Kottmann (1, 2) , Yi Yilmaz (3) , Matthew Cummings , John B Biggins , Kai Blin , Irene de Bruijn , Yi Chooi , Jan Claesen , R Cameron Coates , Pablo Cruz-Morales , Srikanth Duddela , Stephanie Düsterhus , Daniel Edwards (4) , David P Fewer (5) , Neha Garg (6) , Christoph Geiger , Juan Pablo Ju (7) , Jianhua Ju (7) , Anja Greule , Michalis Hadjithomas , Anthony S Haines , Eric J N Helfrich (8) , Matthew L Hillwig , Keishi Ishida , Jon Jones , Katrin Ju , Carsten Kegler (9) , Hyun Uk Kim (10) , Peter Kötter , Daniel Krug , Joleen Masschelein , Alexey V Melnik , Simone M Mantovani , Emily A Monroe , Marcus Moore (11) , Nathan Moss , Hans-Wilhelm Nützmann , Guohui Pan (12) , Amrita Pati , Daniel Petras , F Jerry Reen , Federico Rosconi , Zhe Rui , Zhenhua Tian (13) , Nicholas J Tobias , Yuta Yu (14) , Philipp Wiemann , Elizabeth Wyckoff , Xiaohui Yan (15) , Yi Yim (16) , Fengan Yu (17) , Yunchang Xie (18) , Bertrand Aigle (19) , Alexander K Apel , Carl J Balibar , Emily P Balskus , Francisco Barona-Gómez , Andreas Bechthold , Helge B Bode (9) , Rainer Borriss (20) , Sean Brady , Axel A Brakhage , Patrick Caffrey (21) , Yi Cheng , Jon Clardy , Russell J Cox , René de Mot , Stefano Donadio (22) , Mohamed S Donia , Wilfred A van Der Donk , Pieter C Dorrestein (23) , Sean Doyle (24, 25) , Arnold J M Driessen (26) , Monika Ehling-Schulz (27) , Karl-Dieter Entian , Michael A Fischbach (28) , Lena Gerwick , William H Gerwick (23) , Harald Gross (29) , Bertolt Gust , Christian Hertweck , Monica Höfte (30) , Jens Jensen (31, 32) , Leonard Katz (33) , Leonard Kaysser , Jonathan L Klassen , Nancy P Keller (34) , Jan Kormanec , Oscar P Kuipers (35) , Tomohisa Kuzuyama , Nikos C Kyrpides (36) , Hyung-Jin Kwon (37) , Sylvie Lautru (38, 39) , Rob Lavigne (40) , Chia y Lee , Bai Linquan , Xinyu Liu (41) , Wen Liu (42) , Andriy Luzhetskyy , Taifo Mahmud , Yi Mast , Yvonne Mast , Carmen Méndez (43) , Mikko Metsä-Ketelä , Jason Micklefield , Douglas A Mitchell (44) , Bradley S Moore , Leonilde M Moreira (45) , Rolf Müller (46) , Brett A Neilan , Markus Nett , Jens Nielsen , Fergal O'Gara (47, 48) , Hideaki Oikawa , Anne Osbourn , Marcia S Osburne , Bohdan Ostash , Shelley M Payne (49) , Jean-Luc Pernodet (50, 38) , Miroslav Petricek , Jörn Piel (8) , Olivier Ploux (51) , Jos M Raaijmakers (52, 53) , José A Salas (54) , Esther K Schmitt (55) , Barry Scott , Ryan F Seipke , Ben Shen (56) , David H Sherman , Kaarina Sivonen (5) , Michael J Smanski , Margherita Sosio , Evi Stegmann , Roderich D Süssmuth (57) , Kapil Tahlan , Christopher M Thomas (58) , Yi Tang , Andrew W Truman , Muriel Viaud (59) , Jonathan D Walton (60) , Christopher T Walsh , Tilmann Weber , Gilles P van Wezel , Barrie Wilkinson , Joanne M Willey , Wolfgang Wohlleben , Gerard D Wright , Nadine Ziemert (61) , Changsheng Zhang (62) , Sergey B Zotchev , Rainer Breitling , Eriko Takano , Frank Oliver Glöckner (3) , Jon Moore (63) , Guohui Ju , Xiaohui Ju
1 Jacobs University = Constructor University [Bremen]
2 Microbial genomics and bioinformatics research group
3 Max Planck Institute for Marine Microbiology
4 ACOML - Atmospheric Chemistry Observations and Modeling Laboratory
5 Department of Food and Environmental Sciences
6 Collaborative Mass Spectrometry Innovation Center
7 Heilongjiang Institute of Science and Technology
8 ETH Zürich - Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich]
9 Merck Stiftungsprofessur fûr Molekulare Biotechnologie Fachbereich Biowissenscharten
10 Department of Opto-Mechatronics Engineering and Cogno-Mechatronics Engineering
11 University of Liverpool
12 Zhejiang University of Technology
13 UF - University of Florida [Gainesville]
14 School of Management
15 SKL-NPT - State Key Laboratory of Nuclear Physics and Technology
16 MIT - Massachusetts Institute of Technology
17 Memorial Sloane Kettering Cancer Center [New York]
18 South China Sea Institute of Oceanology
19 DynAMic - Dynamique des Génomes et Adaptation Microbienne
20 IFB - Institut für Biologie [Berlin]
21 School of Biomolecular and Biomedical Science and Centre for Synthesis and Chemical Biology
22 PRISM - Parallélisme, Réseaux, Systèmes, Modélisation
23 Skaggs School of Pharmacy and Pharmaceutical Sciences [San Diego]
24 GIN - [GIN] Grenoble Institut des Neurosciences
25 Pixyl Medical [Grenoble]
26 IOMS - Integrated Optical MicroSystems
27 7Lehrstuhl für Mikrobielle Ökologie, Department für Grundlagen der Biowissenschaften,
28 Service Néphrologie Pédiatrique
29 Advanced Resources and Risk Technology
30 Laboratory of Phytopathology (K.C., H.S., B.A., M.H.)
31 Trifork Aarhus C
32 AAU - Aalborg University [Denmark]
33 CDC - Centers for Disease Control and Prevention [Atlanta]
34 GEMAC - Groupe d'Etude de la Matière Condensée
35 GBB - Groningen Biomolecular Sciences and Biotechnology Institute
36 DOE Joint Genome Institute [Walnut Creek]
37 PNU - Pusan National University
38 ACTINO - Microbiologie Moléculaire des Actinomycètes
39 IGM - Institut de génétique et microbiologie [Orsay]
40 Laboratory of Gene Technology
41 JCSG - Joint Center for Structural Genomics
42 CEREGE - Centre Européen de Recherche et d'Enseignement des Géosciences de l'Environnement
43 CRAPEL - Centre de Recherches et d'Applications Pédagogiques en Langues
44 SSL - Space Sciences Laboratory [Berkeley]
45 Polytechnic Institute of Leiria
46 NMR Laboratory, Université de Mons
47 School of Biomedical Science
48 BIOMERIT Research Centre, School of Microbiology
49 Department of Engineering Science
50 I2BC - Institut de Biologie Intégrative de la Cellule
51 Laboratoire Charles Friedel
52 Laboratory of Phytopathology
53 Department of Microbial Ecology
54 Department of Animal Production
55 IMV Technologies
56 Gulliver (UMR 7083)
57 Institut für Chemie
58 LNC - Lipides - Nutrition - Cancer (U866)
59 CRPP - Centre de Recherche Paul Pascal
60 DEPARTMENT OF CHEMISTRY
61 Molekulare Ökologie
62 Joint Attosecond Science Laboratory
63 MAE - UC Davis - Department of Mechanical and Aerospace Engineering [Univ California Davis]
Marnix H Medema
  • Function : Author
Matthew Cummings
  • Function : Author
John B Biggins
  • Function : Author
Kai Blin
  • Function : Author
Irene de Bruijn
  • Function : Author
Yi Chooi
  • Function : Author
Jan Claesen
  • Function : Author
R Cameron Coates
  • Function : Author
Pablo Cruz-Morales
  • Function : Author
Srikanth Duddela
  • Function : Author
Stephanie Düsterhus
  • Function : Author
Christoph Geiger
  • Function : Author
Anja Greule
  • Function : Author
Michalis Hadjithomas
  • Function : Author
Anthony S Haines
  • Function : Author
Matthew L Hillwig
  • Function : Author
Keishi Ishida
  • Function : Author
Jon Jones
  • Function : Author
Katrin Ju
  • Function : Author
Peter Kötter
  • Function : Author
Daniel Krug
  • Function : Author
Joleen Masschelein
  • Function : Author
Alexey V Melnik
  • Function : Author
Simone M Mantovani
  • Function : Author
Emily A Monroe
  • Function : Author
Nathan Moss
  • Function : Author
Hans-Wilhelm Nützmann
Amrita Pati
  • Function : Author
Daniel Petras
  • Function : Author
F Jerry Reen
  • Function : Author
Federico Rosconi
  • Function : Author
Zhe Rui
  • Function : Author
Nicholas J Tobias
  • Function : Author
Yuta Yu
  • Function : Author
Philipp Wiemann
  • Function : Author
Elizabeth Wyckoff
  • Function : Author
Alexander K Apel
  • Function : Author
Carl J Balibar
  • Function : Author
Emily P Balskus
  • Function : Author
Francisco Barona-Gómez
  • Function : Author
Andreas Bechthold
  • Function : Author
Sean Brady
  • Function : Author
Axel A Brakhage
  • Function : Author
Yi Cheng
  • Function : Author
Jon Clardy
  • Function : Author
Russell J Cox
  • Function : Author
René de Mot
Mohamed S Donia
  • Function : Author
Wilfred A van Der Donk
  • Function : Author
Karl-Dieter Entian
  • Function : Author
Lena Gerwick
  • Function : Author
Harald Gross
Bertolt Gust
  • Function : Author
Christian Hertweck
  • Function : Author
Leonard Kaysser
  • Function : Author
Jonathan L Klassen
  • Function : Author
Jan Kormanec
  • Function : Author
Tomohisa Kuzuyama
  • Function : Author
Rob Lavigne
Chia y Lee
  • Function : Author
Bai Linquan
  • Function : Author
Andriy Luzhetskyy
  • Function : Author
Taifo Mahmud
  • Function : Author
Yi Mast
  • Function : Author
Yvonne Mast
  • Function : Author
Mikko Metsä-Ketelä
  • Function : Author
Jason Micklefield
  • Function : Author
Bradley S Moore
  • Function : Author
Rolf Müller
Brett A Neilan
  • Function : Author
Markus Nett
  • Function : Author
Jens Nielsen
Hideaki Oikawa
  • Function : Author
Anne Osbourn
  • Function : Author
Marcia S Osburne
  • Function : Author
Bohdan Ostash
  • Function : Author
Miroslav Petricek
  • Function : Author
Olivier Ploux
Barry Scott
  • Function : Author
Ryan F Seipke
  • Function : Author
Ben Shen
  • Function : Author
David H Sherman
  • Function : Author
Michael J Smanski
  • Function : Author
Margherita Sosio
  • Function : Author
Evi Stegmann
  • Function : Author
Kapil Tahlan
  • Function : Author
Yi Tang
  • Function : Author
Andrew W Truman
  • Function : Author
Muriel Viaud
Christopher T Walsh
  • Function : Author
Tilmann Weber
Gilles P van Wezel
  • Function : Author
Barrie Wilkinson
  • Function : Author
Joanne M Willey
  • Function : Author
Wolfgang Wohlleben
  • Function : Author
Gerard D Wright
  • Function : Author
Sergey B Zotchev
  • Function : Author
Rainer Breitling
  • Function : Author
Eriko Takano
Guohui Ju
  • Function : Author
Xiaohui Ju
  • Function : Author

Abstract

A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.
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hal-01430728 , version 1 (01-10-2021)

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Marnix H Medema, Renzo Kottmann, Yi Yilmaz, Matthew Cummings, John B Biggins, et al.. Minimum Information about a Biosynthetic Gene cluster.. Nature Chemical Biology, 2015, 11 (9), pp.625-31. ⟨10.1038/nchembio.1890⟩. ⟨hal-01430728⟩
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